You just wrap your query in another one:
SELECT COUNT(*), SUM(Age)
FROM (
SELECT availables.bookdate AS Count, DATEDIFF(now(),availables.updated_at) as Age
FROM availables
INNER JOIN rooms
ON availables.room_id=rooms.id
WHERE availables.bookdate BETWEEN '2009-06-25' AND date_add('2009-06-25', INTERVAL 4 DAY) AND rooms.hostel_id = 5094
GROUP BY availables.bookdate
) AS tmp;