[java] How to run Linux commands in Java?

The suggested solutions could be optimized using commons.io, handling the error stream, and using Exceptions. I would suggest to wrap like this for use in Java 8 or later:

public static List<String> execute(final String command) throws ExecutionFailedException, InterruptedException, IOException {
    try {
        return execute(command, 0, null, false);
    } catch (ExecutionTimeoutException e) { return null; } /* Impossible case! */
}

public static List<String> execute(final String command, final long timeout, final TimeUnit timeUnit) throws ExecutionFailedException, ExecutionTimeoutException, InterruptedException, IOException {
    return execute(command, 0, null, true);
}

public static List<String> execute(final String command, final long timeout, final TimeUnit timeUnit, boolean destroyOnTimeout) throws ExecutionFailedException, ExecutionTimeoutException, InterruptedException, IOException {
    Process process = new ProcessBuilder().command("bash", "-c", command).start();
    if(timeUnit != null) {
        if(process.waitFor(timeout, timeUnit)) {
            if(process.exitValue() == 0) {
                return IOUtils.readLines(process.getInputStream(), StandardCharsets.UTF_8);
            } else {
                throw new ExecutionFailedException("Execution failed: " + command, process.exitValue(), IOUtils.readLines(process.getInputStream(), StandardCharsets.UTF_8));
            }
        } else {
            if(destroyOnTimeout) process.destroy();
            throw new ExecutionTimeoutException("Execution timed out: " + command);
        }
    } else {
        if(process.waitFor() == 0) {
            return IOUtils.readLines(process.getInputStream(), StandardCharsets.UTF_8);
        } else {
            throw new ExecutionFailedException("Execution failed: " + command, process.exitValue(), IOUtils.readLines(process.getInputStream(), StandardCharsets.UTF_8));
        }
    }
}

public static class ExecutionFailedException extends Exception {

    private static final long serialVersionUID = 1951044996696304510L;

    private final int exitCode;
    private final List<String> errorOutput;

    public ExecutionFailedException(final String message, final int exitCode, final List<String> errorOutput) {
        super(message);
        this.exitCode = exitCode;
        this.errorOutput = errorOutput;
    }

    public int getExitCode() {
        return this.exitCode;
    }

    public List<String> getErrorOutput() {
        return this.errorOutput;
    }

}

public static class ExecutionTimeoutException extends Exception {

    private static final long serialVersionUID = 4428595769718054862L;

    public ExecutionTimeoutException(final String message) {
        super(message);
    }

}