[java] process.waitFor() never returns

As others have mentioned you have to consume stderr and stdout.

Compared to the other answers, since Java 1.7 it is even more easy. You do not have to create threads yourself anymore to read stderr and stdout.

Just use the ProcessBuilder and use the methods redirectOutput in combination with either redirectError or redirectErrorStream.

String directory = "/working/dir";
File out = new File(...); // File to write stdout to
File err = new File(...); // File to write stderr to
ProcessBuilder builder = new ProcessBuilder();
builder.directory(new File(directory));
builder.command(command);
builder.redirectOutput(out); // Redirect stdout to file
if(out == err) { 
  builder.redirectErrorStream(true); // Combine stderr into stdout
} else { 
  builder.redirectError(err); // Redirect stderr to file
}
Process process = builder.start();