Be aware of an issue with sparse unique indexes in MongoDB. I've hit it and it is extremely cumbersome to workaround.
The problem is this - you have a field, which is unique if present and you wish to find all the objects where the field is absent. The way sparse unique indexes are implemented in Mongo is that objects where that field is missing are not in the index at all - they cannot be retrieved by a query on that field - {$exists: false}
just does not work.
The only workaround I have come up with is having a special null family of values, where an empty value is translated to a special prefix (like null:) concatenated to a uuid. This is a real headache, because one has to take care of transforming to/from the empty values when writing/quering/reading. A major nuisance.
I have never used server side javascript execution in MongoDB (it is not advised anyway) and their map/reduce has awful performance when there is just one Mongo node. Because of all these reasons I am now considering to check out CouchDB, maybe it fits more to my particular scenario.
BTW, if anyone knows the link to the respective Mongo issue describing the sparse unique index problem - please share.