While existing answers definitely solve the purpose, if your'e looking to replicate nested directory structure under two different subdirectories, then you can do this
mkdir -p {main,test}/{resources,scala/com/company}
It will create following directory structure under the directory from where it is invoked
+-- main
¦ +-- resources
¦ +-- scala
¦ +-- com
¦ +-- company
+-- test
+-- resources
+-- scala
+-- com
+-- company
The example was taken from this link for creating SBT directory structure