Recursive sub folder search and return files in a list python

Question

I am working on a script to recursively go through subfolders in a mainfolder and build a list off a certain file type  I am having an issue with the script  Its currently set as follows  for root  subFolder  files in os walk PATH       for item in files          if item endswith   txt                 fileNamePath   str os path join root subFolder item     the problem is that the subFolder variable is pulling in a list of subfolders rather than the folder that the ITEM file is located   I was thinking of running a for loop for the subfolder before and join the first part of the path but I figured Id double check to see if anyone has any suggestions before that  Thanks for your help

User · Answer

If you don t mind installing an additional light library  you can do this   pip install plazy   Usage   import plazy  txt filter   lambda x   True if x endswith   txt   else False files   plazy list files root  data   filter func txt filter  is include root True    The result should look something like this     data a txt    data b txt    data sub dir c txt     It works on both Python 2 7 and Python 3   Github  https   github com kyzas plazy list-files  Disclaimer  I m an author of plazy

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Changed in Python 3 5  Support for recursive globs using             glob glob   got a new recursive parameter   If you want to get every  txt file under my path  recursively including subdirs    import glob  files   glob glob my path          txt   recursive True     my path      the dir             every file and dir under my path     txt     every file that ends with   txt    If you need an iterator you can use iglob as an alternative   for file in glob iglob my path  recursive False

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You can use the  quot recursive quot  setting within glob module to search through subdirectories For example  import glob glob glob    Mypath folder       recursive   True   The second line would return all files within subdirectories for that folder location  Note  you need the        string at the end of your folder string to do this   If you specifically wanted to find text files deep within your subdirectories  you can use glob glob    Mypath folder      txt  recursive   True

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Your original solution was very nearly correct  but the variable  quot root quot  is dynamically updated as it recursively paths around  os walk   is a recursive generator  Each tuple set of  root  subFolder  files  is for a specific root the way you have it setup  i e  root    C     subFolder     Users    ProgramFiles    ProgramFiles  x86     Windows        files     foo1 txt    foo2 txt    foo3 txt         root    C   Users    subFolder     UserAccount1    UserAccount2        files     bar1 txt    bar2 txt    bar3 txt              I made a slight tweak to your code to print a full list  import os for root  subFolder  files in os walk PATH       for item in files          if item endswith  quot  txt quot                 fileNamePath   str os path join root item               print fileNamePath   Hope this helps  EDIT   based on feeback  OP misunderstood mislabeled the subFolder variable  as it is actually all the sub folders in  quot root quot   Because of this  OP  you re trying to do os path join str  list  str   which probably doesn t work out like you expected  To help add clarity  you could try this labeling scheme  import os for current dir path  current subdirs  current files in os walk RECURSIVE ROOT       for aFile in current files          if aFile endswith  quot  txt quot                 txt file path   str os path join current dir path  aFile               print txt file path

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This function will recursively put only files into a list  import os   def ls files dir       files   list       for item in os listdir dir           abspath   os path join dir  item          try              if os path isdir abspath                   files   files   ls files abspath              else                  files append abspath          except FileNotFoundError as err              print  invalid directory n    Error     err      return files

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The new pathlib library simplifies this to one line   from pathlib import Path result   list Path PATH  glob       txt      You can also use the generator version   from pathlib import Path for file in Path PATH  glob       txt        pass   This returns Path objects  which you can use for pretty much anything  or get the file name as a string by file name

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You can do it this way to return you a list of absolute path files   def list files recursive path               Function that receives as a parameter a directory path      return list   File List and Its Absolute Paths              import os      files             r   root  d   directories  f   files     for r  d  f in os walk path           for file in f              files append os path join r  file        lst    file for file in files      return lst   if   name         main          result   list files recursive   tmp       print result

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I will translate John La Rooy s list comprehension to nested for s  just in case anyone else has trouble understanding it  result    y for x in os walk PATH  for y in glob os path join x 0      txt      Should be equivalent to  import glob import os  result       for x in os walk PATH       for y in glob glob os path join x 0      txt             result append y   Here s the documentation for list comprehension and the functions os walk and glob glob

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You should be using the dirpath which you call root  The dirnames are supplied so you can prune it if there are folders that you don t wish os walk to recurse into   import os result    os path join dp  f  for dp  dn  filenames in os walk PATH  for f in filenames if os path splitext f  1       txt     Edit   After the latest downvote  it occurred to me that glob is a better tool for selecting by extension   import os from glob import glob result    y for x in os walk PATH  for y in glob os path join x 0      txt       Also a generator version  from itertools import chain result    chain from iterable glob os path join x 0      txt    for x in os walk          Edit2 for Python 3 4   from pathlib import Path result   list Path      rglob     tT  xX  tT

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Recursive is new in Python 3 5  so it won t work on Python 2 7  Here is the example that uses r strings so you just need to provide the path as is on either Win  Lin       import glob  mypath r C  Users dj Desktop nba   files   glob glob mypath   r       py   recursive True    print files    as list for f in files      print f    nice looking single line per file   Note  It will list all files  no matter how deep it should go

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This seems to be the fastest solution I could come up with  and is faster than os walk and a lot faster than any glob solution   It will also give you a list of all nested subfolders at basically no cost  You can search for several different extensions  You can also choose to return either full paths or just the names for the files by changing f path to f name  do not change it for subfolders     Args  dir  str  ext  list  Function returns two lists  subfolders  files  See below for a detailed speed anaylsis  def run fast scandir dir  ext        dir  str  ext  list     subfolders  files               for f in os scandir dir           if f is dir                subfolders append f path          if f is file                if os path splitext f name  1  lower   in ext                  files append f path        for dir in list subfolders           sf  f   run fast scandir dir  ext          subfolders extend sf          files extend f      return subfolders  files   subfolders  files   run fast scandir folder    quot  jpg quot     In case you need the file size  you can also create a sizes list and add f stat   st size like this for a display of MiB  sizes append f quot  f stat   st size 1024 1024  0f  MiB quot     Speed analysis for various methods to get all files with a specific file extension inside all subfolders and the main folder  tl dr   fast scandir clearly wins and is twice as fast as all other solutions  except os walk  os walk is second place slighly slower  using glob will greatly slow down the process  None of the results use natural sorting  This means results will be sorted like this  1  10  2  To get natural sorting  1  2  10   please have a look at https   stackoverflow com a 48030307 2441026     Results    fast scandir    took  499 ms  Found files  16596  Found subfolders  439 os walk         took  589 ms  Found files  16596 find files      took  919 ms  Found files  16596 glob iglob      took  998 ms  Found files  16596 glob glob       took 1002 ms  Found files  16596 pathlib rglob   took 1041 ms  Found files  16596 os walk-glob    took 1043 ms  Found files  16596  Tests were done with W7x64  Python 3 8 1  20 runs  16596 files in 439  partially nested  subfolders  find files is from https   stackoverflow com a 45646357 2441026 and lets you search for several extensions  fast scandir was written by myself and will also return a list of subfolders  You can give it a list of extensions to search for  I tested a list with one entry to a simple if         quot  jpg quot  and there was no significant difference      - - coding  utf-8 - -   Python 3   import time import os from glob import glob  iglob from pathlib import Path   directory   r quot  lt folder gt  quot  RUNS   20   def run os walk        a   time time ns       for i in range RUNS           fu    os path join dp  f  for dp  dn  filenames in os walk directory  for f in filenames if                   os path splitext f  1  lower        jpg       print f quot os walk t t ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len fu   quot     def run os walk glob        a   time time ns       for i in range RUNS           fu    y for x in os walk directory  for y in glob os path join x 0      jpg         print f quot os walk-glob ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len fu   quot     def run glob        a   time time ns       for i in range RUNS           fu   glob os path join directory           jpg    recursive True      print f quot glob glob t ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len fu   quot     def run iglob        a   time time ns       for i in range RUNS           fu   list iglob os path join directory           jpg    recursive True       print f quot glob iglob t ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len fu   quot     def run pathlib rglob        a   time time ns       for i in range RUNS           fu   list Path directory  rglob  quot   jpg quot        print f quot pathlib rglob ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len fu   quot     def find files files  dirs     extensions            https   stackoverflow com a 45646357 2441026      new dirs          for d in dirs          try              new dirs      os path join d  f  for f in os listdir d            except OSError              if os path splitext d  1  lower   in extensions                  files append d       if new dirs          find files files  new dirs  extensions       else          return   def run fast scandir dir  ext        dir  str  ext  list       https   stackoverflow com a 59803793 2441026      subfolders  files               for f in os scandir dir           if f is dir                subfolders append f path          if f is file                if os path splitext f name  1  lower   in ext                  files append f path        for dir in list subfolders           sf  f   run fast scandir dir  ext          subfolders extend sf          files extend f      return subfolders  files    if   name         main         run os walk       run os walk glob       run glob       run iglob       run pathlib rglob         a   time time ns       for i in range RUNS           files              find files files  dirs  directory   extensions   quot  jpg quot        print f quot find files t ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len files   quot         a   time time ns       for i in range RUNS           subf  files   run fast scandir directory    quot  jpg quot        print f quot fast scandir ttook   time time ns   - a    1000   1000   RUNS  0f  ms  Found files   len files    Found subfolders   len subf   quot

User · Answer

Its not the most pythonic answer  but I ll put it here for fun because it s a neat lesson in recursion  def find files  files  dirs     extensions          new dirs          for d in dirs          try              new dirs      os path join d  f  for f in os listdir d            except OSError              if os path splitext d  1  in extensions                  files append d       if new dirs          find files files  new dirs  extensions       else          return   On my machine I have two folders  root and root2  mender multivax  ls -R root root2 root  temp1 temp2  root temp1  temp1 1 temp1 2  root temp1 temp1 1  f1 mid  root temp1 temp1 2  f mi  f mid  root temp2  tmp mid  root2  dummie txt temp3  root2 temp3  song mid   Lets say I want to find all  txt and all  mid files in either of these directories  then I can just do   files      find files  files  dirs   root   root2    extensions    mid    txt     print files      root2 dummie txt      root temp2 tmp mid      root2 temp3 song mid      root temp1 temp1 1 f1 mid      root temp1 temp1 2 f mid

[python] Recursive sub folder search and return files in a list python

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