I had a similar issue, and I could use customized Boost libraries by adding the below lines to my CMakeLists.txt
file:
set(Boost_NO_SYSTEM_PATHS TRUE)
if (Boost_NO_SYSTEM_PATHS)
set(BOOST_ROOT "${CMAKE_CURRENT_SOURCE_DIR}/../../3p/boost")
set(BOOST_INCLUDE_DIRS "${BOOST_ROOT}/include")
set(BOOST_LIBRARY_DIRS "${BOOST_ROOT}/lib")
endif (Boost_NO_SYSTEM_PATHS)
find_package(Boost REQUIRED regex date_time system filesystem thread graph program_options)
include_directories(${BOOST_INCLUDE_DIRS})