[python] How to add header row to a pandas DataFrame

I am reading a csv file into pandas. This csv file constists of four columns and some rows, but does not have a header row, which I want to add. I have been trying the following:

Cov = pd.read_csv("path/to/file.txt", sep='\t')
Frame=pd.DataFrame([Cov], columns = ["Sequence", "Start", "End", "Coverage"])
Frame.to_csv("path/to/file.txt", sep='\t')

But when I apply the code, I get the following Error:

ValueError: Shape of passed values is (1, 1), indices imply (4, 1)

What exactly does the error mean? And what would be a clean way in python to add a header row to my csv file/pandas df?

This question is related to python csv pandas header

The answer is


col_Names=["Sequence", "Start", "End", "Coverage"]
my_CSV_File= pd.read_csv("yourCSVFile.csv",names=col_Names)

having done this, just check it with[well obviously I know, u know that. But still...

my_CSV_File.head()

Hope it helps ... Cheers


To fix your code you can simply change [Cov] to Cov.values, the first parameter of pd.DataFrame will become a multi-dimensional numpy array:

Cov = pd.read_csv("path/to/file.txt", sep='\t')
Frame=pd.DataFrame(Cov.values, columns = ["Sequence", "Start", "End", "Coverage"])
Frame.to_csv("path/to/file.txt", sep='\t')

But the smartest solution still is use pd.read_excel with header=None and names=columns_list.


Alternatively you could read you csv with header=None and then add it with df.columns:

Cov = pd.read_csv("path/to/file.txt", sep='\t', header=None)
Cov.columns = ["Sequence", "Start", "End", "Coverage"]

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