I know this is a very old thread, but still like to add my penny worth.
If I really need to code up a simple hex string to binary converter, I'd like to do it as follows.
public static byte[] hexToBinary(String s){
/*
* skipped any input validation code
*/
byte[] data = new byte[s.length()/2];
for( int i=0, j=0;
i<s.length() && j<data.length;
i+=2, j++)
{
data[j] = (byte)Integer.parseInt(s.substring(i, i+2), 16);
}
return data;
}