I've had issues with using SELECT last_insert_rowid()
in a multithreaded environment. If another thread inserts into another table that has an autoinc, last_insert_rowid will return the autoinc value from the new table.
Here's where they state that in the doco:
If a separate thread performs a new INSERT on the same database connection while the sqlite3_last_insert_rowid() function is running and thus changes the last insert rowid, then the value returned by sqlite3_last_insert_rowid() is unpredictable and might not equal either the old or the new last insert rowid.
That's from sqlite.org doco