If you want to split a dataframe according to values of some variable, I'd suggest using daply()
from the plyr
package.
library(plyr)
x <- daply(df, .(splitting_variable), function(x)return(x))
Now, x
is an array of dataframes. To access one of the dataframes, you can index it with the name of the level of the splitting variable.
x$Level1
#or
x[["Level1"]]
I'd be sure that there aren't other more clever ways to deal with your data before splitting it up into many dataframes though.