var array = [5, 5, 5, 2, 2, 2, 2, 2, 9, 4];
function countDuplicates(obj, num){
obj[num] = (++obj[num] || 1);
return obj;
}
var answer = array.reduce(countDuplicates, {});
// answer => {2:5, 4:1, 5:3, 9:1};
If you still want two arrays, then you could use answer like this...
var uniqueNums = Object.keys(answer);
// uniqueNums => ["2", "4", "5", "9"];
var countOfNums = Object.keys(answer).map(key => answer[key]);
// countOfNums => [5, 1, 3, 1];
Or if you want uniqueNums to be numbers
var uniqueNums = Object.keys(answer).map(key => +key);
// uniqueNums => [2, 4, 5, 9];