The amount of hacks you would need to go through to completely hide the fact your site is built by Meteor.js is absolutely ridiculous. You would have to strip essentially all core functionality and just serve straight up html, completely defeating the purpose of using the framework anyway.
That being said, I suggest looking at buildwith.com
You enter a url, and it reveals a ton of information about a site. If you only need to "fool" engines like this, there may be simple solutions.