My solution is inspired from the last comment. This is the code of invisible.html
<script src="http://code.jquery.com/jquery-1.8.2.js"></script>
<script type="text/javascript" src="invisible_debut.js" ></script>
<body>
</body>
The clear code of invisible_debut.js is:
$(document).ready(function () {
var ga = document.createElement("script"); //ga is to remember Google Analytics ;-)
ga.type = 'text/javascript';
ga.src = 'invisible.js';
ga.id = 'invisible';
document.body.appendChild(ga);
$('#invisible').remove();});
Notice that at the end I'm removing the created script. invisible.js is:
$(document).ready(function(){
alert('try to find in the source the js script which did this alert!');
document.write('It disappeared, my dear!');});
invisible.js doesn't appear in the console, because it has been removed and never in the source code because created by javascript.
Concerning invisible_debut.js, I obfuscated it, which means that it is very complicated to find the url of invisible.js. Not perfect, but enought hard for a normal hacker.