"How do I for example read a 3 bit integer value starting at the second bit?"
int number = // whatever;
uint8_t val; // uint8_t is the smallest data type capable of holding 3 bits
val = (number & (1 << 2 | 1 << 3 | 1 << 4)) >> 2;
(I assumed that "second bit" is bit #2, i. e. the third bit really.)