I'm wondering if there is a simpler, memory efficient way to select a subset of rows and columns from a pandas DataFrame.
For instance, given this dataframe:
df = DataFrame(np.random.rand(4,5), columns = list('abcde')) print df a b c d e 0 0.945686 0.000710 0.909158 0.892892 0.326670 1 0.919359 0.667057 0.462478 0.008204 0.473096 2 0.976163 0.621712 0.208423 0.980471 0.048334 3 0.459039 0.788318 0.309892 0.100539 0.753992
I want only those rows in which the value for column 'c' is greater than 0.5, but I only need columns 'b' and 'e' for those rows.
This is the method that I've come up with - perhaps there is a better "pandas" way?
locs = [df.columns.get_loc(_) for _ in ['a', 'd']] print df[df.c > 0.5][locs] a d 0 0.945686 0.892892
My final goal is to convert the result to a numpy array to pass into an sklearn regression algorithm, so I will use the code above like this:
training_set = array(df[df.c > 0.5][locs])
... and that peeves me since I end up with a huge array copy in memory. Perhaps there's a better way for that too?
This question is related to
python
arrays
numpy
pandas
scikit-learn
.loc
accept row and column selectors simultaneously (as do .ix/.iloc
FYI)
This is done in a single pass as well.
In [1]: df = DataFrame(np.random.rand(4,5), columns = list('abcde'))
In [2]: df
Out[2]:
a b c d e
0 0.669701 0.780497 0.955690 0.451573 0.232194
1 0.952762 0.585579 0.890801 0.643251 0.556220
2 0.900713 0.790938 0.952628 0.505775 0.582365
3 0.994205 0.330560 0.286694 0.125061 0.575153
In [5]: df.loc[df['c']>0.5,['a','d']]
Out[5]:
a d
0 0.669701 0.451573
1 0.952762 0.643251
2 0.900713 0.505775
And if you want the values (though this should pass directly to sklearn as is); frames support the array interface
In [6]: df.loc[df['c']>0.5,['a','d']].values
Out[6]:
array([[ 0.66970138, 0.45157274],
[ 0.95276167, 0.64325143],
[ 0.90071271, 0.50577509]])
Perhaps something like this for the first problem, you can simply access the columns by their names:
>>> df = pd.DataFrame(np.random.rand(4,5), columns = list('abcde'))
>>> df[df['c']>.5][['b','e']]
b e
1 0.071146 0.132145
2 0.495152 0.420219
For the second problem:
>>> df[df['c']>.5][['b','e']].values
array([[ 0.07114556, 0.13214495],
[ 0.49515157, 0.42021946]])
Use its value directly:
In [79]: df[df.c > 0.5][['b', 'e']].values
Out[79]:
array([[ 0.98836259, 0.82403141],
[ 0.337358 , 0.02054435],
[ 0.29271728, 0.37813099],
[ 0.70033513, 0.69919695]])
Source: Stackoverflow.com