You can use the REG command. From http://www.ss64.com/nt/reg.html:
Syntax:
REG QUERY [ROOT\]RegKey /v ValueName [/s]
REG QUERY [ROOT\]RegKey /ve --This returns the (default) value
REG ADD [ROOT\]RegKey /v ValueName [/t DataType] [/S Separator] [/d Data] [/f]
REG ADD [ROOT\]RegKey /ve [/d Data] [/f] -- Set the (default) value
REG DELETE [ROOT\]RegKey /v ValueName [/f]
REG DELETE [ROOT\]RegKey /ve [/f] -- Remove the (default) value
REG DELETE [ROOT\]RegKey /va [/f] -- Delete all values under this key
REG COPY [\\SourceMachine\][ROOT\]RegKey [\\DestMachine\][ROOT\]RegKey
REG EXPORT [ROOT\]RegKey FileName.reg
REG IMPORT FileName.reg
REG SAVE [ROOT\]RegKey FileName.hiv
REG RESTORE \\MachineName\[ROOT]\KeyName FileName.hiv
REG LOAD FileName KeyName
REG UNLOAD KeyName
REG COMPARE [ROOT\]RegKey [ROOT\]RegKey [/v ValueName] [Output] [/s]
REG COMPARE [ROOT\]RegKey [ROOT\]RegKey [/ve] [Output] [/s]
Key:
ROOT :
HKLM = HKey_Local_machine (default)
HKCU = HKey_current_user
HKU = HKey_users
HKCR = HKey_classes_root
ValueName : The value, under the selected RegKey, to edit.
(default is all keys and values)
/d Data : The actual data to store as a "String", integer etc
/f : Force an update without prompting "Value exists, overwrite Y/N"
\\Machine : Name of remote machine - omitting defaults to current machine.
Only HKLM and HKU are available on remote machines.
FileName : The filename to save or restore a registry hive.
KeyName : A key name to load a hive file into. (Creating a new key)
/S : Query all subkeys and values.
/S Separator : Character to use as the separator in REG_MULTI_SZ values
the default is "\0"
/t DataType : REG_SZ (default) | REG_DWORD | REG_EXPAND_SZ | REG_MULTI_SZ
Output : /od (only differences) /os (only matches) /oa (all) /on (no output)