git diff -p \
| grep -E '^(diff|old mode|new mode)' \
| sed -e 's/^old/NEW/;s/^new/old/;s/^NEW/new/' \
| git apply
will work in most cases but if you have external diff tools like meld installed you have to add --no-ext-diff
git diff --no-ext-diff -p \
| grep -E '^(diff|old mode|new mode)' \
| sed -e 's/^old/NEW/;s/^new/old/;s/^NEW/new/' \
| git apply
was needed in my situation