[python] matplotlib colorbar for scatter

I'm working with data that has the data has 3 plotting parameters: x,y,c. How do you create a custom color value for a scatter plot?

Extending this example I'm trying to do:

import matplotlib
import matplotlib.pyplot as plt
cm = matplotlib.cm.get_cmap('RdYlBu')
colors=[cm(1.*i/20) for i in range(20)]
xy = range(20)
plt.subplot(111)
colorlist=[colors[x/2] for x in xy] #actually some other non-linear relationship
plt.scatter(xy, xy, c=colorlist, s=35, vmin=0, vmax=20)
plt.colorbar()
plt.show()

but the result is TypeError: You must first set_array for mappable

This question is related to python colors matplotlib

The answer is


Here is the OOP way of adding a colorbar:

fig, ax = plt.subplots()
im = ax.scatter(x, y, c=c)
fig.colorbar(im, ax=ax)

If you're looking to scatter by two variables and color by the third, Altair can be a great choice.

Creating the dataset

import matplotlib.pyplot as plt
import numpy as np
import pandas as pd

df = pd.DataFrame(40*np.random.randn(10, 3), columns=['A', 'B','C'])

Altair plot

from altair import *
Chart(df).mark_circle().encode(x='A',y='B', color='C').configure_cell(width=200, height=150)

Plot

enter image description here


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