If you want to create the popup window through jQuery then you'll need to use a plugin. This one seems like it will do what you want:
http://rip747.github.com/popupwindow/
Alternately, you can always use JavaScript's window.open function.
Note that with either approach, the new window must be opened in response to user input/action (so for instance, a click on a link or button). Otherwise the browser's popup blocker will just block the popup.