I am not a Bootstrap expert, but it sounds to me that you should define a new class called nohover (or something equivalent) then in your link code add the class as the last attribute value:
<a class="green nohover" href="#">green text</a>
<a class="yellow nohover" href="#">yellow text</a>
Then in your Bootstrap LESS/CSS file, define nohover (using the JSFiddle example above):
a:hover { color: red }
/* Green */
a.green { color: green; }
/* Yellow */
a.yellow { color: yellow; }
a.nohover:hover { color: none; }
Forked the JSFiddle here: http://jsfiddle.net/9rpkq/