Old post, but this zombie is hitting VS 2017 (I haven't dug into why it's just "some" projects). In this case, it's not user permissions, rather IIS Express process is still using the files.
You'll see the icon in your task tray
rebuild
without this annoying "permission denied" message.This is also why "restarting Visual Studio" will "fix" the issue. Doing so, stops IIS Express.
Hth...