[c] Time in milliseconds in C

From man clock:

The clock() function returns an approximation of processor time used by the program.

So there is no indication you should treat it as milliseconds. Some standards require precise value of CLOCKS_PER_SEC, so you could rely on it, but I don't think it is advisable. Second thing is that, as @unwind stated, it is not float/double. Man times suggests that will be an int. Also note that:

this function will return the same value approximately every 72 minutes

And if you are unlucky you might hit the moment it is just about to start counting from zero, thus getting negative or huge value (depending on whether you store the result as signed or unsigned value).

This:

printf("\n\n%6.3f", stop);

Will most probably print garbage as treating any int as float is really not defined behaviour (and I think this is where most of your problem comes). If you want to make sure you can always do:

printf("\n\n%6.3f", (double) stop);

Though I would rather go for printing it as long long int at first:

printf("\n\n%lldf", (long long int) stop);

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