I don't see where you're adding the new column, but try this:
import csv
i = 0
Berry = open("newcolumn.csv","r").readlines()
with open(input.csv,'r') as csvinput:
with open(output.csv, 'w') as csvoutput:
writer = csv.writer(csvoutput)
for row in csv.reader(csvinput):
writer.writerow(row+","+Berry[i])
i++