Here is a post which introduces different types of keystore in Java and the differences among different types of keystore. http://www.pixelstech.net/article/1408345768-Different-types-of-keystore-in-Java----Overview
Below are the descriptions of different keystores from the post:
JKS, Java Key Store. You can find this file at sun.security.provider.JavaKeyStore. This keystore is Java specific, it usually has an extension of jks. This type of keystore can contain private keys and certificates, but it cannot be used to store secret keys. Since it's a Java specific keystore, so it cannot be used in other programming languages.
JCEKS, JCE key store. You can find this file at com.sun.crypto.provider.JceKeyStore. This keystore has an extension of jceks. The entries which can be put in the JCEKS keystore are private keys, secret keys and certificates.
PKCS12, this is a standard keystore type which can be used in Java and other languages. You can find this keystore implementation at sun.security.pkcs12.PKCS12KeyStore. It usually has an extension of p12 or pfx. You can store private keys, secret keys and certificates on this type.
PKCS11, this is a hardware keystore type. It servers an interface for the Java library to connect with hardware keystore devices such as Luna, nCipher. You can find this implementation at sun.security.pkcs11.P11KeyStore. When you load the keystore, you no need to create a specific provider with specific configuration. This keystore can store private keys, secret keys and cetrificates. When loading the keystore, the entries will be retrieved from the keystore and then converted into software entries.