Sorry for answering so late.
I figured an answer alike to @xlm 's:
task run (type: JavaExec, dependsOn: classes){
if(project.hasProperty('myargs')){
args(myargs.split(','))
}
description = "Secure algorythm testing"
main = "main.Test"
classpath = sourceSets.main.runtimeClasspath
}
And invoke like:
gradle run -Pmyargs=-d,s