[arrays] Array of Matrices in MATLAB

myArrayOfMatrices = zeros(unknown,500,800);

If you're running out of memory throw more RAM in your system, and make sure you're running a 64 bit OS. Also try reducing your precision (do you really need doubles or can you get by with singles?):

myArrayOfMatrices = zeros(unknown,500,800,'single');

To append to that array try:

myArrayOfMatrices(unknown+1,:,:) = zeros(500,800);

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