How to define partitioning of DataFrame

Question

I ve started using Spark SQL and DataFrames in Spark 1 4 0   I m wanting to define a custom partitioner on DataFrames  in Scala  but not seeing how to do this   One of the data tables I m working with contains a list of transactions  by account  silimar to the following example   Account   Date       Type       Amount 1001    2014-04-01  Purchase    100 00 1001    2014-04-01  Purchase     50 00 1001    2014-04-05  Purchase     70 00 1001    2014-04-01  Payment    -150 00 1002    2014-04-01  Purchase     80 00 1002    2014-04-02  Purchase     22 00 1002    2014-04-04  Payment    -120 00 1002    2014-04-04  Purchase     60 00 1003    2014-04-02  Purchase    210 00 1003    2014-04-03  Purchase     15 00   At least initially  most of the calculations will occur between the transactions within an account   So I would want to have the data partitioned so that all of the transactions for an account are in the same Spark partition   But I m not seeing a way to define this   The DataFrame class has a method called  repartition Int    where you can specify the number of partitions to create   But I m not seeing any method available to define a custom partitioner for a DataFrame  such as can be specified for an RDD   The source data is stored in Parquet   I did see that when writing a DataFrame to Parquet  you can specify a column to partition by  so presumably I could tell Parquet to  partition it s data by the  Account  column   But there could be millions of accounts  and if I m understanding Parquet correctly  it would create a distinct directory for each Account  so that didn t sound like a reasonable solution   Is there a way to get Spark to partition this DataFrame so that all data for an Account is in the same partition

User · Answer

So to start with some kind of answer     - You can t  I am not an expert  but as far as I understand DataFrames  they are not equal to rdd and DataFrame has no such thing as Partitioner   Generally DataFrame s idea is to provide another level of abstraction that handles such problems itself  The queries on DataFrame are translated into logical plan that is further translated to operations on RDDs  The partitioning you suggested will probably be applied automatically or at least should be   If you don t trust SparkSQL that it will provide some kind of optimal job  you can always transform DataFrame to RDD Row  as suggested in of the comments

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In Spark  lt  1 6 If you create a HiveContext  not the plain old SqlContext you can use the HiveQL DISTRIBUTE BY colX     ensures each of N reducers gets non-overlapping ranges of x   amp  CLUSTER BY colX     shortcut for Distribute By and Sort By  for example    df registerTempTable  partitionMe   hiveCtx sql  select   from partitionMe DISTRIBUTE BY accountId SORT BY accountId  date     Not sure how this fits in with Spark DF api  These keywords aren t supported in the normal SqlContext  note you dont need to have a hive meta store to use the HiveContext   EDIT  Spark 1 6  now has this in the native DataFrame API

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Spark    2 3 0  SPARK-22614 exposes range partitioning   val partitionedByRange   df repartitionByRange 42    k    partitionedByRange explain       Parsed Logical Plan        RepartitionByExpression   k ASC NULLS FIRST   42     - AnalysisBarrier Project   1 2 AS k 5   2 3 AS v 6            Analyzed Logical Plan       k  string  v  int    RepartitionByExpression  k 5 ASC NULLS FIRST   42     - Project   1 2 AS k 5   2 3 AS v 6         - LocalRelation   1 2   2 3            Optimized Logical Plan       RepartitionByExpression  k 5 ASC NULLS FIRST   42     - LocalRelation  k 5  v 6            Physical Plan       Exchange rangepartitioning k 5 ASC NULLS FIRST  42      - LocalTableScan  k 5  v 6    SPARK-22389 exposes external format partitioning in the Data Source API v2   Spark    1 6 0  In Spark    1 6 it is possible to use partitioning by column for query and caching  See  SPARK-11410 and SPARK-4849 using repartition method   val df   Seq      A   1     B   2     A   3     C   1    toDF  k    v    val partitioned   df repartition   k   partitioned explain     scala gt  df repartition   k   explain true        Parsed Logical Plan        RepartitionByExpression   k   None     - Project   1 5 AS k 7  2 6 AS v 8         - LogicalRDD   1 5  2 6   MapPartitionsRDD 3  at rddToDataFrameHolder at  lt console gt  27           Analyzed Logical Plan       k  string  v  int    RepartitionByExpression  k 7   None     - Project   1 5 AS k 7  2 6 AS v 8         - LogicalRDD   1 5  2 6   MapPartitionsRDD 3  at rddToDataFrameHolder at  lt console gt  27           Optimized Logical Plan       RepartitionByExpression  k 7   None     - Project   1 5 AS k 7  2 6 AS v 8         - LogicalRDD   1 5  2 6   MapPartitionsRDD 3  at rddToDataFrameHolder at  lt console gt  27           Physical Plan       TungstenExchange hashpartitioning k 7 200   None     - Project   1 5 AS k 7  2 6 AS v 8         - Scan PhysicalRDD  1 5  2 6    Unlike RDDs Spark Dataset  including Dataset Row  a k a DataFrame  cannot use custom partitioner as for now  You can typically address that by creating an artificial partitioning column but it won t give you the same flexibility    Spark  lt  1 6 0   One thing you can do is to pre-partition input data before you create a DataFrame  import org apache spark sql types   import org apache spark sql Row import org apache spark HashPartitioner  val schema   StructType Seq    StructField  x   StringType  false     StructField  y   LongType  false     StructField  z   DoubleType  false      val rdd   sc parallelize Seq    Row  foo   1L  0 5   Row  bar   0L  0 0   Row       -1L  2 0     Row  foo   -1L  0 0   Row       3L  0 6   Row  bar   -3L  0 99      val partitioner   new HashPartitioner 5    val partitioned   rdd map r   gt   r getString 0   r      partitionBy partitioner     values  val df   sqlContext createDataFrame partitioned  schema    Since DataFrame creation from an RDD requires only a simple map phase existing partition layout should be preserved    assert df rdd partitions    partitioned partitions    The same way you can repartition existing DataFrame   sqlContext createDataFrame    df rdd map r   gt   r getInt 1   r   partitionBy partitioner  values    df schema     So it looks like it is not impossible  The question remains if it make sense at all  I will argue that most of the time it doesn t    Repartitioning is an expensive process  In a typical scenario most of the data has to be serialized  shuffled and deserialized  From the other hand number of operations which can benefit from a pre-partitioned data is relatively small and is further limited if internal API is not designed to leverage this property     joins in some scenarios  but it would require an internal support  window functions calls with matching partitioner  Same as above  limited to a single window definition  It is already partitioned internally though  so pre-partitioning may be redundant  simple aggregations with GROUP BY - it is possible to reduce memory footprint of the temporary buffers    but overall cost is much higher  More or less equivalent to groupByKey mapValues   reduce   current behavior  vs reduceByKey  pre-partitioning   Unlikely to be useful in practice  data compression with SqlContext cacheTable  Since it looks like it is using run length encoding  applying OrderedRDDFunctions repartitionAndSortWithinPartitions could improve compression ratio    Performance is highly dependent on a distribution of the keys  If it is skewed it will result in a suboptimal resource utilization  In the worst case scenario it will be impossible to finish the job at all   A whole point of using a high level declarative API is to isolate yourself from a low level implementation details  As already mentioned by  dwysakowicz and  RomiKuntsman an optimization is a job of the Catalyst Optimizer  It is a pretty sophisticated beast and I really doubt you can easily improve on that without diving much deeper into its internals    Related concepts  Partitioning with JDBC sources   JDBC data sources support predicates argument  It can be used as follows   sqlContext read jdbc url  table  Array  foo   1    foo   3    props    It creates a single JDBC partition per predicate  Keep in mind that if sets created using individual predicates are not disjoint you ll see duplicates in the resulting table   partitionBy method in DataFrameWriter   Spark DataFrameWriter provides partitionBy method which can be used to  partition  data on write  It separates data on write using provided set of columns  val df   Seq      foo   1 0     bar   2 0     foo   1 5     bar   2 6    toDF  k    v    df write partitionBy  k   json   tmp foo json     This enables predicate push down on read for queries based on key   val df1   sqlContext read schema df schema  json   tmp foo json   df1 where   k       bar     but it is not equivalent to DataFrame repartition  In particular aggregations like   val cnts   df1 groupBy   k   sum     will still require TungstenExchange   cnts explain        Physical Plan       TungstenAggregate key  k 90   functions   sum v 91  mode Final isDistinct false    output  k 90 sum v  93       - TungstenExchange hashpartitioning k 90 200   None        - TungstenAggregate key  k 90   functions   sum v 91  mode Partial isDistinct false    output  k 90 sum 99             - Scan JSONRelation k 90 v 91  InputPaths  file  tmp foo json   bucketBy method in DataFrameWriter  Spark    2 0    bucketBy has similar applications as partitionBy but it is available only for tables  saveAsTable   Bucketing information can used to optimize joins      Temporarily disable broadcast joins spark conf set  spark sql autoBroadcastJoinThreshold   -1   df write bucketBy 42   k   saveAsTable  df1   val df2   Seq   A   -1 0     B   2 0   toDF  k    v2   df2 write bucketBy 42   k   saveAsTable  df2          Physical Plan        Project  k 41  v 42  v2 47      -  SortMergeJoin  k 41    k 46   Inner        -  Sort  k 41 ASC NULLS FIRST   false  0           -  Project  k 41  v 42               -  Filter isnotnull k 41                  -  FileScan parquet default df1 k 41 v 42  Batched  true  Format  Parquet  Location  InMemoryFileIndex file  spark-warehouse df1   PartitionFilters      PushedFilters   IsNotNull k    ReadSchema  struct lt k string v int gt         -  Sort  k 46 ASC NULLS FIRST   false  0           -  Project  k 46  v2 47               -  Filter isnotnull k 46                  -  FileScan parquet default df2 k 46 v2 47  Batched  true  Format  Parquet  Location  InMemoryFileIndex file  spark-warehouse df2   PartitionFilters      PushedFilters   IsNotNull k    ReadSchema  struct lt k string v2 double gt        By partition layout I mean only a data distribution  partitioned RDD has no longer a partitioner     Assuming no early projection  If aggregation covers only small subset of columns there is probably no gain whatsoever

User · Answer

Use the DataFrame returned by   yourDF orderBy account    There is no explicit way to use partitionBy on a DataFrame  only on a PairRDD  but when you sort a DataFrame  it will use that in it s LogicalPlan and that will help when you need to make calculations on each Account   I just stumbled upon the same exact issue  with a dataframe that I want to partition by account  I assume that when you say  want to have the data partitioned so that all of the transactions for an account are in the same Spark partition   you want it for scale and performance  but your code doesn t depend on it  like using mapPartitions   etc   right

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I was able to do this using RDD  But I don t know if this is an acceptable solution for you  Once you have the DF available as an RDD  you can apply repartitionAndSortWithinPartitions to perform custom repartitioning of data    Here is a sample I used   class DatePartitioner partitions  Int  extends Partitioner      override def getPartition key  Any   Int         val start time  Long   key asInstanceOf Long      Objects hash Array start time     partitions        override def numPartitions  Int   partitions    myRDD    repartitionAndSortWithinPartitions new DatePartitioner 24      map   v   gt  v  2      toDF      write mode SaveMode Overwrite

[scala] How to define partitioning of DataFrame?

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