[node.js] What could cause an error related to npm not being able to find a file? No contents in my node_modules subfolder. Why is that?

Following what @viveknuna suggested, I upgraded to the latest version of node.js and npm using the downloaded installer. I also installed the latest version of yarn using a downloaded installer. Then, as you can see below, I upgraded angular-cli and typescript. Here's what that process looked like:

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>npm install -g @angular/cli@latest
C:\Users\Jack\AppData\Roaming\npm\ng -> C:\Users\Jack\AppData\Roaming\npm\node_modules\@angular\cli\bin\ng
npm WARN optional SKIPPING OPTIONAL DEPENDENCY: [email protected] (node_modules\@angular\cli\node_modules\fsevents):
npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for [email protected]: wanted {"os":"darwin","arch":"any"} (current: {"os":"win32","arch":"x64"})

+ @angular/[email protected]
added 75 packages, removed 166 packages, updated 61 packages and moved 24 packages in 29.084s

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>npm install -g typescript
C:\Users\Jack\AppData\Roaming\npm\tsserver -> C:\Users\Jack\AppData\Roaming\npm\node_modules\typescript\bin\tsserver
C:\Users\Jack\AppData\Roaming\npm\tsc -> C:\Users\Jack\AppData\Roaming\npm\node_modules\typescript\bin\tsc
+ [email protected]
updated 1 package in 2.427s

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>node -v
v8.10.0

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>npm -v
5.6.0

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>yarn --version
1.5.1

Thereafter, I ran yarn and npm start in my angular folder and all appears to be well. Here's what that looked like:

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>yarn
yarn install v1.5.1
[1/4] Resolving packages...
[2/4] Fetching packages...
info [email protected]: The platform "win32" is incompatible with this module.
info "[email protected]" is an optional dependency and failed compatibility check. Excluding it from installation.
[3/4] Linking dependencies...
warning "@angular/cli > @schematics/[email protected]" has incorrect peer dependency "@angular-devkit/[email protected]".
warning "@angular/cli > @angular-devkit/schematics > @schematics/[email protected]" has incorrect peer dependency "@angular-devkit/[email protected]".
warning " > [email protected]" has incorrect peer dependency "@angular/compiler@^2.3.1 || >=4.0.0-beta <5.0.0".
warning " > [email protected]" has incorrect peer dependency "@angular/core@^2.3.1 || >=4.0.0-beta <5.0.0".
[4/4] Building fresh packages...
Done in 232.79s.

D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular>npm start

> [email protected] start D:\Dev\AspNetBoilerplate\MyProject\3.5.0\angular
> ng serve --host 0.0.0.0 --port 4200

** NG Live Development Server is listening on 0.0.0.0:4200, open your browser on http://localhost:4200/ **
Date: 2018-03-22T13:17:28.935Z
Hash: 8f226b6fa069b7c201ea
Time: 22494ms
chunk {account.module} account.module.chunk.js () 129 kB  [rendered]
chunk {app.module} app.module.chunk.js () 497 kB  [rendered]
chunk {common} common.chunk.js (common) 1.46 MB  [rendered]
chunk {inline} inline.bundle.js (inline) 5.79 kB [entry] [rendered]
chunk {main} main.bundle.js (main) 515 kB [initial] [rendered]
chunk {polyfills} polyfills.bundle.js (polyfills) 1.1 MB [initial] [rendered]
chunk {styles} styles.bundle.js (styles) 1.53 MB [initial] [rendered]
chunk {vendor} vendor.bundle.js (vendor) 15.1 MB [initial] [rendered]

webpack: Compiled successfully.

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What could cause an error related to npm not being able to find a file? No contents in my node_modules subfolder. Why is that?