PLOTYY allows two different y-axes. Or you might look into LayerPlot from the File Exchange. I guess I should ask if you've considered using HOLD or just rescaling the data and using regular old plot?
OLD, not what the OP was looking for: SUBPLOT allows you to break a figure window into multiple axes. Then if you want to have only one x-axis showing, or some other customization, you can manipulate each axis independently.