I lost a lot of time on this stupid issue, and i think the message is quite right "there is not the host in the file i'm accessing" but you can have more than a know_host file around on your system (as example i'm using mobaXterm and it keep it's own inside the installation directory mounting the home from that root).
If you are experiencing : it's working from command line but not form the application try to access to your remote server with ssh and check with verbose -v option which file is currently used an example following:
ssh -v [email protected]
OpenSSH_6.2p2, OpenSSL 1.0.1g 7 Apr 2014
debug1: Reading configuration data /etc/ssh_config
debug1: Connecting to gitlab.com [104.210.2.228] port 22.
debug1: Connection established.
debug1: identity file /home/mobaxterm/.ssh/id_rsa type 1
debug1: identity file /home/mobaxterm/.ssh/id_rsa-cert type -1
debug1: identity file /home/mobaxterm/.ssh/id_dsa type -1
debug1: identity file /home/mobaxterm/.ssh/id_dsa-cert type -1
debug1: identity file /home/mobaxterm/.ssh/id_ecdsa type -1
debug1: identity file /home/mobaxterm/.ssh/id_ecdsa-cert type -1
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-2.0-OpenSSH_6.2
debug1: Remote protocol version 2.0, remote software version OpenSSH_7.2p2 Ubuntu-4ubuntu2.1
debug1: match: OpenSSH_7.2p2 Ubuntu-4ubuntu2.1 pat OpenSSH*
debug1: SSH2_MSG_KEXINIT sent
debug1: SSH2_MSG_KEXINIT received
debug1: kex: server->client aes128-ctr [email protected] [email protected]
debug1: kex: client->server aes128-ctr [email protected] [email protected]
debug1: sending SSH2_MSG_KEX_ECDH_INIT
debug1: expecting SSH2_MSG_KEX_ECDH_REPLY
debug1: Server host key: RSA b6:03:0e:39:97:9e:d0:e7:24:ce:a3:77:3e:01:42:09
debug1: Host 'gitlab.com' is known and matches the RSA host key.
debug1: Found key in /home/mobaxterm/.ssh/known_hosts:19
debug1: ssh_rsa_verify: signature correct
as you can see the key was found in :
debug1: Found key in /home/mobaxterm/.ssh/known_hosts:19
and not in my windows home under C:\Users\my_local_user\.ssh , i simply merged them and aligned for solve the issue.
Hope this help someone in future