[linux] How to substitute shell variables in complex text files

Call the perl binary, in search and replace per line mode ( the -pi ) by running the perl code ( the -e) in the single quotes, which iterates over the keys of the special %ENV hash containing the exported variable names as keys and the exported variable values as the keys' values and for each iteration simple replace a string containing a $<<key>> with its <<value>>.

 perl -pi -e 'foreach $key(sort keys %ENV){ s/\$$key/$ENV{$key}/g}' file

Caveat: An additional logic handling is required for cases in which two or more vars start with the same string ...

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