[markdown] How to add footnotes to GitHub-flavoured Markdown?

Although the question is about GitHub flavored Markdown, I think it's worth mentioning that as of 2013, GitHub supports AsciiDoc which has this feature builtin. You only need to rename your file with a .adoc extension and use:

A statement.footnote:[Clarification about this statement.]

A bold statement!footnote:disclaimer[Opinions are my own.]

Another bold statement.footnote:disclaimer[]

Documentation along with the final result is here.