IndentationError: unexpected unindent WHY???
#!/usr/bin/python
import sys
class Seq:
def __init__(self, id, adnseq, colen):
self.id = id
self.dna = adnseq
self.cdnlen = colen
self.prot = ""
def __str__(self):
return ">%s\n%s\n" % (self.id, self.prot)
def translate(self, transtable):
self.prot = ""
for i in range(0,len(self.dna),self.cdnlen):
codon = self.dna[i:i+self.cdnlen]
aa = transtable[codon]
self.prot += aa
def parseCommandOptions(cmdargs):
tfname = cmdargs[1]
sfname = cmdargs[2]
return (tfname, sfname)
def readTTable(fname):
try:
ttable = {}
cdnlen = -1
tfile = open(fname, "r")
for line in tfile:
linearr = line.split()
codon = linearr[0]
cdnlen = len(codon)
aa = linearr[1]
ttable[codon] = aa
tfile.close()
return (ttable, cdnlen)
def translateSData(sfname, cdnlen, ttable):
try:
sequences = []
seqf = open(seq_fname, "r")
line = seqf.readline()
while line:
if line[0] == ">":
id = line[1:len(line)].strip()
seq = ""
line = seqf.readline()
while line and line[0] != '>':
seq += line.strip()
line = seqf.readline()
sequence = Seq(id, seq, cdnlen)
sequence.translate(ttable)
sequences.append(sequence)
seqf.close()
return sequences
if __name__ == "__main__":
(trans_table_fname, seq_fname) = parseCommandOptions(sys.argv)
(transtable, colen) = readTTable(trans_table_fname)
seqs = translateSData(seq_fname, colen, transtable)
for s in seqs:
print s
It says:
def translateSeqData(sfname, cdnlen, ttable):
^
IndentationError: unexpected unindent
WHY? I have checked a thousands times and I can't find the problem. I have only used Tabs and no spaces. Plus, sometimes it asks to define the class. Is that Ok?
This question is related to
python
indentation
you didn't complete your try
statement. You need and except
in there too.
@MaxPython The answer above is missing ":"
try:
#do something
except:
# print 'error/exception'
def printError(e): print e
This error could actually be in the code preceding where the error is reported. See the For example, if you have a syntax error as below, you'll get the indentation error. The syntax error is actually next to the "except" because it should contain a ":" right after it.
try:
#do something
except
print 'error/exception'
def printError(e):
print e
If you change "except" above to "except:", the error will go away.
Good luck.
Source: Stackoverflow.com