That can happen if for some reason a x86 resource is loaded from a x64 machine. To avoid that explicitly, add this preprocessor directive to stdafx.h (of course, in my example the problematic resource is Windows Common Controls DLL.
#if defined(_WIN64)
#pragma comment(linker, "\"/manifestdependency:type='win32' name='Microsoft.Windows.Common-Controls' version='6.0.0.0' processorArchitecture='amd64' publicKeyToken='6595b64144ccf1df'\"")
#endif