Is there a library function for Root mean square error RMSE in python

Question

I know I could implement a root mean squared error function like this   def rmse predictions  targets       return np sqrt   predictions - targets     2  mean      What I m looking for if this rmse function is implemented in a library somewhere  perhaps in scipy or scikit-learn

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from sklearn import metrics import bumpy as np print no sqrt metrics mean squared error actual predicted

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This is probably faster    n   len predictions  rmse   np linalg norm predictions - targets    np sqrt n

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What is RMSE   Also known as MSE  RMD  or RMS   What problem does it solve   If you understand RMSE   Root mean squared error   MSE   Mean Squared Error  RMD  Root mean squared deviation  and RMS   Root Mean Squared   then asking for a library to calculate this for you is unnecessary over-engineering   All these metrics are a single line of python code at most 2 inches long   The three metrics rmse  mse  rmd  and rms are at their core conceptually identical   RMSE answers the question   How similar  on average  are the numbers in list1 to list2     The two lists must be the same size   I want to  wash out the noise between any two given elements  wash out the size of the data collected  and get a single number feel for change over time     Intuition and ELI5 for RMSE   Imagine you are learning to throw darts at a dart board   Every day you practice for one hour   You want to figure out if you are getting better or getting worse   So every day you make 10 throws and measure the distance between the bullseye and where your dart hit   You make a list of those numbers list1   Use the root mean squared error between the distances at day 1 and a list2 containing all zeros   Do the same on the 2nd and nth days   What you will get is a single number that hopefully decreases over time   When your RMSE number is zero  you hit bullseyes every time   If the rmse number goes up  you are getting worse   Example in calculating root mean squared error in python   import numpy as np d    0 000  0 166  0 333     ideal target distances  these can be all zeros  p    0 000  0 254  0 998     your performance goes here  print  d is      str     8f    elem for elem in d    print  p is      str     8f    elem for elem in p     def rmse predictions  targets       return np sqrt   predictions - targets     2  mean     rmse val   rmse np array d   np array p   print  rms error is      str rmse val     Which prints   d is    0 00000000    0 16600000    0 33300000   p is    0 00000000    0 25400000    0 99800000   rms error between lists d and p is  0 387284994115   The mathematical notation     Glyph Legend  n is a whole positive integer representing the number of throws   i represents a whole positive integer counter that enumerates sum   d stands for the ideal distances  the list2 containing all zeros in above example   p stands for performance  the list1 in the above example   superscript 2 stands for numeric squared   di is the i th index of d   pi is the i th index of p   The rmse done in small steps so it can be understood   def rmse predictions  targets        differences   predictions - targets                        the DIFFERENCEs       differences squared   differences    2                     the SQUAREs of        mean of differences squared   differences squared mean     the MEAN of        rmse val   np sqrt mean of differences squared             ROOT of        return rmse val                                            get the     How does every step of RMSE work   Subtracting one number from another gives you the distance between them   8 - 5   3          absolute distance between 8 and 5 is  3 -20 - 10   -30     absolute distance between -20 and 10 is  30   If you multiply any number times itself  the result is always positive because negative times negative is positive     3 3       9     positive -30 -30   900   positive   Add them all up  but wait  then an array with many elements would have a larger error than a small array  so average them by the number of elements   But wait  we squared them all earlier to force them positive   Undo the damage with a square root     That leaves you with a single number that represents  on average  the distance between every value of list1 to it s corresponding element value of list2   If the RMSE value goes down over time we are happy because variance is decreasing   RMSE isn t the most accurate line fitting strategy  total least squares is   Root mean squared error measures the vertical distance between the point and the line  so if your data is shaped like a banana  flat near the bottom and steep near the top  then the RMSE will report greater distances to points high  but short distances to points low when in fact the distances are equivalent  This causes a skew where the line prefers to be closer to points high than low   If this is a problem the total least squares method fixes this   https   mubaris com posts linear-regression  Gotchas that can break this RMSE function   If there are nulls or infinity in either input list  then output rmse value is is going to not make sense   There are three strategies to deal with nulls   missing values   infinities in either list  Ignore that component  zero it out or add a best guess or a uniform random noise to all timesteps   Each remedy has its pros and cons depending on what your data means   In general ignoring any component with a missing value is preferred  but this biases the RMSE toward zero making you think performance has improved when it really hasn t   Adding random noise on a best guess could be preferred if there are lots of missing values     In order to guarantee relative correctness of the RMSE output  you must eliminate all nulls infinites from the input   RMSE has zero tolerance for outlier data points which don t belong  Root mean squared error squares relies on all data being right and all are counted as equal   That means one stray point that s way out in left field is going to totally ruin the whole calculation   To handle outlier data points and dismiss their tremendous influence after a certain threshold  see Robust estimators that build in a threshold for dismissal of outliers

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Or by simply using only NumPy functions   def rmse y  y pred       return np sqrt np mean np square y - y pred      Where    y is my target y pred is my prediction   Note that rmse y  y pred   rmse y pred  y  due to the square function

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from sklearn metrics import mean squared error rmse   mean squared error y actual  y predicted  squared False   or   import math from sklearn metrics import mean squared error rmse   math sqrt mean squared error y actual  y predicted

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Here s an example code that calculates the RMSE between two polygon file formats PLY  It uses both the ml metrics lib and the np linalg norm   import sys import SimpleITK as sitk from pyntcloud import PyntCloud as pc import numpy as np from ml metrics import rmse  if len sys argv   lt  3 or sys argv 1      -h  or sys argv 1      --help       print  Usage  compute-rmse py  lt input1 ply gt   lt input2 ply gt        sys exit 1   def verify rmse a  b       n   len a      return np linalg norm np array b  - np array a     np sqrt n   def compare a  b       m   pc from file a  points     n   pc from file b  points     m     tuple m x   tuple m y   tuple m z     m   m 0      n     tuple n x   tuple n y   tuple n z     n   n 0      v1  v2   verify rmse m  n   rmse m n      print v1  v2   compare sys argv 1   sys argv 2

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sklearn  gt   0 22 0 sklearn metrics has a mean squared error function with a squared kwarg  defaults to True   Setting squared to False will return the RMSE  from sklearn metrics import mean squared error  rms   mean squared error y actual  y predicted  squared False   sklearn  lt  0 22 0 sklearn metrics has a mean squared error function  The RMSE is just the square root of whatever it returns  from sklearn metrics import mean squared error from math import sqrt  rms   sqrt mean squared error y actual  y predicted

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No  there is a library Scikit Learn for machine learning and it can be easily employed by using Python language  It has the a function for Mean Squared Error which i am sharing the link below    https   scikit-learn org stable modules generated sklearn metrics mean squared error html   The function is named mean squared error as given below  where y true would be real class values for the data tuples and y pred would be the predicted values  predicted by the machine learning algorithm you are using    mean squared error y true  y pred    You have to modify it to get RMSE  by using sqrt function using Python  This process is described in this link  https   www codeastar com regression-model-rmsd    So  final code would be something like   from sklearn metrics import mean squared error from math import sqrt  RMSD   sqrt mean squared error testing y  prediction    print RMSD

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Actually  I did write a bunch of those as utility functions for statsmodels  http   statsmodels sourceforge net devel tools html measure-for-fit-performance-eval-measures  and  http   statsmodels sourceforge net devel generated statsmodels tools eval measures rmse html statsmodels tools eval measures rmse  Mostly one or two liners and not much input checking  and mainly intended for easily getting some statistics when comparing arrays  But they have unit tests for the axis arguments  because that s where I sometimes make sloppy mistakes

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Just in case someone finds this thread in 2019  there is a library called ml metrics which is available without pre-installation in Kaggle s kernels  pretty lightweighted and accessible through pypi   it can be installed easily and fast with pip install ml metrics    from ml metrics import rmse rmse actual  0  1  2   predicted  1  10  5     5 507570547286102   It has few other interesting metrics which are not available in sklearn  like mapk   References    https   pypi org project ml metrics  https   github com benhamner Metrics tree master Python

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You can t find RMSE function directly in SKLearn  But   instead of manually doing sqrt   there is another standard way using sklearn  Apparently  Sklearn s mean squared error itself contains a parameter called as  squared  with default  value as true  If we set it to false  the same function will return RMSE instead of MSE     code changes implemented by Esha Prakash from sklearn metrics import mean squared error rmse   mean squared error y true  y pred   squared False

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from sklearn import metrics               import numpy as np print np sqrt metrics mean squared error y test y predict

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In scikit-learn 0 22 0 you can pass mean squared error   the argument squared False to return the RMSE   from sklearn metrics import mean squared error  mean squared error y actual  y predicted  squared False

[python] Is there a library function for Root mean square error (RMSE) in python?

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