[python] How to get the indices list of all NaN value in numpy array?

Say now I have a numpy array which is defined as,

[[1,2,3,4],
[2,3,NaN,5],
[NaN,5,2,3]]

Now I want to have a list that contains all the indices of the missing values, which is [(1,2),(2,0)] at this case.

Is there any way I can do that?

This question is related to python numpy scipy

The answer is


np.isnan combined with np.argwhere

x = np.array([[1,2,3,4],
              [2,3,np.nan,5],
              [np.nan,5,2,3]])
np.argwhere(np.isnan(x))

output:

array([[1, 2],
       [2, 0]])

Since x!=x returns the same boolean array with np.isnan(x) (because np.nan!=np.nan would return True), you could also write:

np.argwhere(x!=x)

However, I still recommend writing np.argwhere(np.isnan(x)) since it is more readable. I just try to provide another way to write the code in this answer.


You can use np.where to match the boolean conditions corresponding to Nan values of the array and map each outcome to generate a list of tuples.

>>>list(map(tuple, np.where(np.isnan(x))))
[(1, 2), (2, 0)]

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