Why are you using Javascript to write the script tags? Simply add the script tags to your head section. So your document will look something like this:
<html>
<head>
<!-- Whatever you want here -->
<script src="/javascripts/jquery.js" type="text/javascript"></script>
<script src="/javascripts/jquery.tablesorter.js" type="text/javascript"></script>
</head>
<body>
The contents of the page.
</body>
</html>