I just came across this problem and wanted to find something about the performance, but I couldn't, so I wrote a benchmarking script on my own:
% Config:
rows = 1e6;
runs = 50;
% Start:
orig = round(rand(rows, 1));
t1 = 0;
for i = 1:runs
A = orig;
tic
A(A == 0) = [];
t1 = t1 + toc;
end
t1 = t1 / runs;
t2 = 0;
for i = 1:runs
A = orig;
tic
A = A(A ~= 0);
t2 = t2 + toc;
end
t2 = t2 / runs;
t1
t2
t1 / t2
So you see, the solution using A = A(A ~= 0)
is the quicker of the two :)