You need to apply 3d transform to the element, so it will get its own composite layer. For instance:
.element{
-webkit-transform: translateZ(0);
transform: translateZ(0);
}
or
.element{
-webkit-transform: translate3d(0,0,0);
transform: translate3d(0,0,0);
}
More about layer creation criteria you can read right here: Accelerated Rendering in Chrome
An explanation:
Examples (hover green box):
When you use any transition on your element it cause browser to recalculate styles, then re-layout your content even if transition property is visual (in my examples it is an opacity) and finaly paint an element:
The issue here is re-layout of the content that can make an effect of "dancing" or "blinking" elements on the page while transition happens. If you will go to settings, check "Show composite layers" checkbox and then apply 3d transform to an element, you will see that it gets it's own layer which outlined with orange border.
After element gets its own layer, browser just needs to composite layers on transition without re-layout or even paint operations so problem have to be solved: