It looks like this is the case when Chrome is not compliant with WebSocket standard. When the server initiates close and sends close frame to a client, Chrome considers this to be an error and reports it to JS side with code 1006 and no reason message. In my tests, Chrome never responds to server-initiated close frames (close code 1000) suggesting that code 1006 probably means that Chrome is reporting its own internal error.
P.S. Firefox v57.00 handles this case properly and successfully delivers server's reason message to JS side.