[r] Plot a line graph, error in xy.coords(x, y, xlabel, ylabel, log) : 'x' and 'y' lengths differ

plot(t) is in this case the same as

plot(t[[1]], t[[2]])

As the error message says, x and y differ in length and that is because you plot a list with length 4 against 1:

> length(t)
[1] 4
> length(1)
[1] 1

In your second example you plot a list with elements named x and y, both vectors of length 2, so plot plots these two vectors.

Edit:

If you want to plot lines use

plot(t, type="l")