[windows] open program minimized via command prompt

You could try using the third-party tool called NirCmd. It is a genuine, free command line utility. If or when you have it, use this code in a batch file:

title Open Word
nircmd win hide title "Open Word"
start "C:\Program" "Files" "(x86)\Microsoft" "Office\Office12\WINWORD.exe
nircmd wait 20
nircmd win min foreground
exit

This program, in order, changes its title, hides itself according to its title, starts Word, waits 20 milliseconds as a buffer for Word to settle, minimizes Word by assuming it is now the top window, and then exits itself. This program should work as intended as long as their are no key presses or clicks in that ~50 millisecond time window, which shouldn't be hard.

As for installing nircmd on your computer, use this link, and click "Download NirCmd" at the bottom of the page. Save the .zip folder to a normal directory (like "My Documents"), extract it, and copy "nircmd.exe" to %systemroot%\system32, and there you go. Now you have nircmd included with your command line utilities.