[javascript] ReferenceError: document is not defined (in plain JavaScript)

It depends on when the self executing anonymous function is running. It is possible that it is running before window.document is defined.

In that case, try adding a listener

window.addEventListener('load', yourFunction, false);
// ..... or 
window.addEventListener('DOMContentLoaded', yourFunction, false);

yourFunction () {
  // some ocde

}

Update: (after the update of the question and inclusion of the code)

Read the following about the issues in referencing DOM elements from a JavaScript inserted and run in head element:
- “getElementsByTagName(…)[0]” is undefined?
- Traversing the DOM