I use the following SQL Server Management Objects code to get a list of databases that aren't system databases and aren't snapshots.
using Microsoft.SqlServer.Management.Smo;
public static string[] GetDatabaseNames( string serverName )
{
var server = new Server( serverName );
return ( from Database database in server.Databases
where !database.IsSystemObject && !database.IsDatabaseSnapshot
select database.Name
).ToArray();
}