I am using Jenkins with .net projects and had troubles with MVC 4 references.
I finallys solved my issue by using a .Net reference search engine functionality based on the registry using :
"HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\Microsoft.NETFramework\v2.0.50727\AssemblyFoldersEx"
You can create subkey et set the default key to "c:\myreferenceedir" for example.
It saved me with MVC versions and also ASP.net Web pages.
Usefull to add references to the "Add Reference Dialog"