Here is a part of the response that tells you if an element is in the viewport. You may need to check if there is nothing on top of it using elementFromPoint, but it's a bit longer.
function isInViewport(element) {
var rect = element.getBoundingClientRect();
var windowHeight = window.innerHeight || document.documentElement.clientHeight;
var windowWidth = window.innerWidth || document.documentElement.clientWidth;
return rect.bottom > 0 && rect.top < windowHeight && rect.right > 0 && rect.left < windowWidth;
}