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After making the shortcut as you have, set the following in Properties:
Target: %comspec% /k "data\run.bat" Drop the /k if you don't want the prompt to stay open after you've run it. Start In: %cd%\data
Target: %comspec% /k "data\run.bat"
%comspec% /k "data\run.bat"
/k
Start In: %cd%\data
%cd%\data