[git] Are multiple `.gitignore`s frowned on?

You can have multiple .gitignore, each one of course in its own directory.
To check which gitignore rule is responsible for ignoring a file, use git check-ignore: git check-ignore -v -- afile.

And you can have different version of a .gitignore file per branch: I have already seen that kind of configuration for ensuring one branch ignores a file while the other branch does not: see this question for instance.

If your repo includes several independent projects, it would be best to reference them as submodules though.
That would be the actual best practices, allowing each of those projects to be cloned independently (with their respective .gitignore files), while being referenced by a specific revision in a global parent project.
See true nature of submodules for more.


Note that, since git 1.8.2 (March 2013) you can do a git check-ignore -v -- yourfile in order to see which gitignore run (from which .gitignore file) is applied to 'yourfile', and better understand why said file is ignored.
See "which gitignore rule is ignoring my file?"