I tried to load my R workspace and received this error:
Error: bad restore file magic number (file may be corrupted) -- no data loaded
In addition: Warning message:
file ‘WORKSPACE_Wedding_Weekend_September’ has magic number '#gets'
Use of save versions prior to 2 is deprecated
I'm not particularly interested in the technical details, but mostly in how I caused it and how I can prevent it in the future. Here's some notes on the situation:
This question is related to
r
workspace
magic-numbers
I got that error when I accidentally used load()
instead of source()
or readRDS()
.
Assuming your file is named "myfile.ext"
If the file you're trying to load is not an R-script, for which you would use
source("myfile.ext")
you might try the readRDS
function and assign it to a variable-name:
my.data <- readRDS("myfile.ext")
I had this problem when I saved the Rdata file in an older version of R and then I tried to open in a new one. I solved by updating my R version to the newest.
I got the error when building an R package (using roxygen2)
The cause in my case was that I had saved data/mydata.RData
with saveRDS()
rather than save()
. E.g. save(iris, file="data/iris.RData")
This fixed the issue for me. I found this info here
Also note that with save()
/ load()
the object is loaded in with the same name it is initially saved with (i.e you can't rename it until it's already loaded into the R environment under the name it had when you initially saved it).
It also occurs when you try to load()
an rds object instead of using
object <- readRDS("object.rds")
Install the readr
package, then use library(readr)
.
The magic number comes from UNIX-type systems where the first few bytes of a file held a marker indicating the file type.
This error indicates you are trying to load a non-valid file type into R. For some reason, R no longer recognizes this file as an R workspace file.
If you are working with devtools
try to save the files with:
devtools::use_data(x, internal = TRUE)
Then, delete all files saved previously.
From doc:
internal If FALSE, saves each object in individual .rda files in the data directory. These are available whenever the package is loaded. If TRUE, stores all objects in a single R/sysdata.rda file. These objects are only available within the package.
Also worth noting the following from a document by the R Core Team summarizing changes in versions of R after v3.5.0 (here):
R has new serialization format (version 3) which supports custom serialization of ALTREP framework objects... Serialized data in format 3 cannot be read by versions of R prior to version 3.5.0.
I encountered this issue when I saved a workspace in v3.6.0, and then shared the file with a colleague that was using v3.4.2. I was able to resolve the issue by adding "version=2" to my save function.
Source: Stackoverflow.com